Titlebook: Algorithms for Computational Biology; 8th International Co Carlos Martín-Vide,Miguel A. Vega-Rodríguez,Travis Conference proceedings 2021 S

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The Maximum Weight Trace Alignment Merging Problemcally designed for MWT-AM. We show that the best of these variants, which we refer to as GCM-MWT, perform well for the MWT-AM criterion. We explore GCM-MWT in comparison to other methods for merging alignments, T-coffee and MAFFT–merge, and find that GCM-MWT produces more accurate merged alignments.

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Carlos Martín-Vide,Miguel A. Vega-Rodríguez,Travis

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Conference proceedings 2021ectrometry analysis; transcriptomics: splicing variants, isoform inference and quantification, differential analysis; next-generation sequencing: population genomics, metagenomics, metatranscriptomics, epigenomics; genome CD architecture; microbiome analysis; cancer computational biology; and system

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Johannes Willenbrink,Hermann Fischerthis paper we exploit the variable sparsity of biological dynamical systems in computing their equilibria by using sparse triangular decomposition. The variable sparsity of a biological dynamical system is characterized via the associated graph constructed from the polynomial set in the system. To m

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https://doi.org/10.1007/978-3-642-86168-0points are parents of leaves. Cherry-picking operations were recently shown to have several structural and algorithmic applications in the study of networks, for instance in determining their reconstructibility or in solving the network hybridization and network containment problems. In particular,